PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002712.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 786aa    MW: 89954.5 Da    PI: 6.3613
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002712.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.25.3e-3279170291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                              fYn+YA++vGFs+r+s+s++s+++g i++r fvCskeg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+++++eH
  Itr_sc002712.1_g00002.1  79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCSKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEH 164
                              9***************************************998888545677889******************************* PP

                     FAR1  86 nHelap 91 
                              nHel+p
  Itr_sc002712.1_g00002.1 165 NHELVP 170
                              ****86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-3079170IPR004330FAR1 DNA binding domain
PfamPF105513.6E-32291383IPR018289MULE transposase domain
PfamPF044345.7E-12559605IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.041571607IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MENEVIEFDI GIGGGGGSED GDGDVILENM DDAETMPNCS PAHSSDALIV SGIYTPTGDL  60
DLEPFDGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCSKEGFRNL  120
NEKRTKDREI KRPRTITRVG CKAALSVKIQ DSGKWVVSNF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSLEGD  240
TQLLLDYLRQ MHAENPDFFY AVQGDEDQCT GNVFWADHKA RANYNYFGDT VTFDTTYRSN  300
RYRLPFAPFT GINHHGQPVL FGCAFLINES EASFIWLFKT WLAAMFGNPP VSITTDHDEV  360
IRSAIMQVFP ESRHRFCKWH IFKKCQEKLS HVFLKYPNFE ADFHKCVNLT ESTEEYESCW  420
FSLVSKYELR DHDWLQAIYS DRRHWVPVYL RDTFFAEMSI TQHSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALDSRHEKEV KADYDTMNTL PALKTPSPME KQASEVYTRK IFMRFQEELV  540
GTLTFMATKV EDEGGVTIYQ VAKFGEDHKA YCVRFNVLEM KATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNAKSTVTL EERVADAFSG YLESHTVRYN MLRHEAFKFV  660
EDGAESVSSY VVAMAALGEA SKKVSLAAKH DGKISLLNGR NQDDSISDGI QENLNIEDQH  720
GTFTKLLSED DVDRKIHELT CELDCASRRC EVYRVNLLSV LKDIEDHKQQ LSIKVQNIKI  780
SMKDDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451885.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLK4B4930.0K4B493_SOLLC; Uncharacterized protein
STRINGSolyc01g112320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5